Showing : combat sva • reset
7
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SVA: Including variable of interest in ComBat model matrix
combat sva SVA sva ComBat batch effect
updated 8.0 years ago by ▴ 850 • written 8.0 years ago by ▴ 20
3
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6
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2.3k
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is it necessary to check batch effect in this case? and how to?
svaseq combat sva RANseq batcheffect removebatcheffect
updated 7.5 years ago by ▴ 50 • written 7.6 years ago by ▴ 10
1
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2
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1.5k
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is it possible to before and after batch effect removal from the data and see that batch effect removal actually worked
combat sva batch effect comba
updated 7.5 years ago by ▴ 110 • written 7.5 years ago by ▴ 10
1
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2
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1.3k
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Batch effect problem using SVA showing problems
SVA combat sva batch effect
updated 7.7 years ago by ▴ 650 • written 7.7 years ago by ▴ 10
1
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1
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1.6k
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Inspection of batch effect correction success with ComBat in R, regarding a merged dataset comprised of 4 different batches
affymetrix microarrays sva combat sva batch effect plotMDS
updated 7.7 years ago by ▴ 650 • written 7.7 years ago by ▴ 830
1
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2
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2.5k
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cross platform normalization in R
R Combat SVA
updated 8.3 years ago by ★ 13k • written 8.3 years ago by • 0
0
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0
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1.2k
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What is the input for Combat in R?
combat sva input files
7.2 years ago arisarkar88 ▴ 40
0
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1
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3.4k
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SVA behaving weirdly, system is computationally singular , problem with method leek only
SVA combat sva leek
updated 3.0 years ago by • 0 • written 7.0 years ago by ▴ 10
0
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0
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889
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SVA: Reference manual improvment
combat sva sva
7.0 years ago alice.anlind • 0
0
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0
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1.2k
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removing batch effects using sva combat and linear regression
combat sva microarry Jeff leek
6.8 years ago DataFanatic ▴ 10
0
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1
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1.2k
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Combat prior plots good enough?
combat combat sva
6.6 years ago Miss Agnieszka Aleksandra Golicz ▴ 40
0
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0
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631
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Number of SVA increased after ComBat
combat sva
6.1 years ago jonellevillar • 0
0
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0
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822
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Help with multiple batch effects
combat sva batch effect
5.9 years ago Fp • 0
0
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0
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935
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ComBat covariate bias when building centroid based predictors
combat combat sva pamr limma design matrix sva
5.7 years ago jmsendoya • 0
0
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0
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1.1k
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SVA: Using ComBat for synthetic genetic array data
combat sva sga combat batch effect
8.0 years ago John Townsend ▴ 20
0
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4
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1.9k
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ComBat: Adjustment for 3experimental variables
ENmix combat.mc illumina450k combat sva
7.8 years ago DSP • 0
0
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0
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930
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SVA) Error while using 'sva' package - combat
combat sva
7.7 years ago kkwon • 0
0
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2
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954
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Problem with Combat batch adjustment
combat sva
7.4 years ago vinnu260 ▴ 10
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0
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1.2k
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RPKM counts with SVA package & Combat with SVA?
batch effect combat sva sva
7.2 years ago Ahdee ▴ 50
19 results • Page 1 of 1
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Answer: Differential gene expression analysis results by ATpoint ★ 4.1k
Pease do not open multiple posts for the same issue: https://support.bioconductor.org/p/9158194/#9158222 The support site is not meant f…
Comment: deseq2 results by sajadahmad41454 • 0
thank you for your response, should i remove or discard that sample? since the red outlier on left represents one of healthy samples.
Comment: deseq2 results by swbarnes2 ★ 1.4k
It looks like the PCA plot of a real RNASeq experiment. The red outlier on the left might be the mathematical reason why you have few vali…
Comment: Multi-factorial, longitudinal disease progression analysis with unbalanced patie by Dylan.Sheerin • 0
Thank you very much, Gordon. I'll give voomLmFit a go!
Answer: Multi-factorial, longitudinal disease progression analysis with unbalanced patie by Gordon Smyth 50k
Including subjectID in the design matrix always accounts for unbalanced sampling and patient variation but subjects with incomplete records…
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Comment: deseq2 results
Comment: deseq2 results
Answer: Multi-factorial, longitudinal disease progression analysis with unbalanced patie
Answer: Extremely small p-values using Limma for proteomic data
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